Tree of Life QC: Species Report - Peregriana peregra

Info

NCBI taxon id:	2529398
Order:
Family:	Lymnaeidae
NCBI lineage:	Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Heterobranchia; Euthyneura; Panpulmonata; Hygrophila; Lymnaeoidea; Lymnaeidae; Peregriana;
GoaT genome size (M):	1,334 (ancestor)
GoaT asm span (M):	871 (ancestor)
GoaT chr no.:	17 (ancestor)

Below is information about specimens collected for this species retrieved from the Golden Record manifest.

public_name	specimen_id	gal	collector_affiliation	date_of_collection	sex	organism_part	biosample	biospecimen	lifestage	symbiont	family	order_or_group	genus	taxon_id	scientific_name	common_name	tube_id

Below are estimates of genome size, repeat size, heterozygosity based on k-mer specta analysis with GenomeScope.

source	specimen	k-mer	k-cov	haploid	repeat (%)	het (%)	fit (%)	error (%)	plot

Below are stats for each PacBio seqeuncing run collected for this species.

specimen	sample	date	instrument	run	movie	well	movie length	tag	tag sequence	accession	library load name	species	yield	N50	reads	A (%)	C (%)	G (%)	T (%)	barcode

Below are results from a contamination screen of the PacBio data using Mash screen against RefSeq assemblies.

identity	shared-hashes	median-multiplicity	p-value	query	info

id	taxon	similarity	seq	country	latitude	longitude

Illumina run stats.

source	specimen	run id	read pairs	yield	avg qual	avg length	sample_acc	sanger_id	tag_sequence	tag2_sequence	run status	npg status	date	species	pipeline	barcode

Illumina run stats.

source	specimen	run id	read pairs	yield	avg qual	avg length	sample_acc	sanger_id	tag_sequence	tag2_sequence	run status	npg status	date	species	pipeline

In-progress assembly QC.

specimen	asm	date	contig N50	contigs	scaffold N50	scaffolds	length	BUSCO